![]() Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV). Rangwala SH, Kuznetsov A, Ananiev V, Asztalos A, Borodin E, Evgeniev V, Joukov V, Lotov V, Pannu R, Rudnev D, Shkeda A, Weitz EM, Schneider VA. NCBI Sequence Viewer uses third party tools and libraries. The link will open with three panels (an overview graphical panel a zoomed in graphical panel and a sequence panel) additionally, a marker is set at position 800. This link provides an example of how a viral genome can be shown. Viral genome: AC_000020, sequence viewport and marker This link will open with two views by default: a graphical panel showing the feature annotation on the sequence and a sequence panel providing the bases of the sequence itself. This link shows a sample mRNA sequence from the Mammalian Genome Collection. Two panels are shown by default: an overview panel showing the density of annotated genes along with a select number of genes for reference and a zoomed in graphical view showing individual features on the record. This particular record shows the beta globin locus on chromosome 11. This link shows a reference genomic region, that is, a genomic region that has undergone substantial curation by staff at NCBI. Human reference genomic region: NG_000007 This plugin provides tools and workflows for NGS panel data analysis, including WES, WGS and RNA-seq, as well as SARS-CoV-2 panel analysis workflows for QIAseq and Ion AmpliSeq. There are two panels shown by default: an overview panel showing the density of annotated genes along with a select number of genes for reference and a zoomed in graphical view showing a region of the chromosome itself. Biomedical genomics analysis and panel data analysis functionality is delivered through the QIAGEN CLC Genomics Workbench and the free plugin, Biomedical Genomics Analysis. This link provides a look at human chromosome 1. It can also be used to view some of the analysis outputs of CLC commercial workbenches, with the exceptions of some more advanced data types, such as track-based data, and data stored on a CLC Genomics Server. Embedding the NCBI Sequence View in Web Content CLC Sequence Viewer is a free, user friendly application offering access to basic bioinformatics analyses. ![]()
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